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GH13_49 GH GH family — see CAZy reference
88
target proteins
85
CGCs
all
tree leaves
24
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_49_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_49 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_49 | GH | 88 | — | — |
| GH15 | GH | 51 | — | — |
| GH77 | GH | 16 | — | — |
| GT75 | GT | 7 | — | — |
| GH13 | GH | 6 | — | — |
| GH13_16 | GH | 4 | — | — |
| GT4 | GT | 4 | — | — |
| GH13_2 | GH | 3 | — | — |
| GT35 | GT | 2 | — | — |
| GH13_4 | GH | 2 | — | — |
| GH32 | GH | 2 | — | — |
| GH13_31 | GH | 2 | — | — |
| GH2_19 | GH | 2 | — | — |
| GH13_47 | GH | 1 | — | — |
| GH13_20 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_49_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh13_49_phylogeny.nwk |
| MUSCLE alignment | gh13_49_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_49_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |