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GH32 GH GH family — see CAZy reference
2,013
target proteins
1,804
CGCs
999 / 2,013
tree leaves
224
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh32_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH32 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH32 | GH | 2,013 | — | — |
| GH65 | GH | 48 | — | — |
| S1_7 | S1 | 47 | — | — |
| S1_8 | S1 | 40 | — | — |
| GH13_31 | GH | 31 | — | — |
| GT4 | GT | 31 | — | — |
| GH172 | GH | 29 | — | — |
| GH3 | GH | 25 | — | — |
| GH68_1 | GH | 22 | — | — |
| GH1 | GH | 21 | — | — |
| S1_14 | S1 | 21 | — | — |
| S1_15 | S1 | 19 | — | — |
| GH36 | GH | 19 | — | — |
| GT2 | GT | 19 | — | — |
| GH13_4 | GH | 17 | — | — |
Downloads
| Full SSN (Cytoscape) | GH32_SSN.cys · 42.3 MB |
|---|---|
| Newick | gh32_phylogeny.max999.nwk |
| MUSCLE alignment | gh32_phylogeny.aln.faa |
| Target proteins (FASTA) | gh32_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |