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GH13_31 GH GH family — see CAZy reference
1,048
target proteins
957
CGCs
999 / 1,048
tree leaves
156
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_31_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_31 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_31 | GH | 1,048 | — | — |
| GH65 | GH | 58 | — | — |
| GH13_20 | GH | 58 | — | — |
| GH3 | GH | 34 | — | — |
| GH37 | GH | 30 | — | — |
| GH13_18 | GH | 28 | — | — |
| GH32 | GH | 27 | — | — |
| GH13_38 | GH | 27 | — | — |
| GH13_4 | GH | 26 | — | — |
| S1_7 | S1 | 19 | — | — |
| GH133 | GH | 18 | — | — |
| GH13_48 | GH | 18 | — | — |
| GH13_11 | GH | 17 | — | — |
| GH13_23 | GH | 16 | — | — |
| GH36 | GH | 16 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_31_SSN.cys · 23.6 MB |
|---|---|
| Newick | gh13_31_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_31_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_31_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |