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GH133 GH GH family — see CAZy reference
536
target proteins
536
CGCs
999 / 536
tree leaves
88
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh133_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH133 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH133 | GH | 536 | — | — |
| GH57_3 | GH | 157 | — | — |
| GT4 | GT | 141 | — | — |
| GT3 | GT | 65 | — | — |
| GH63 | GH | 43 | — | — |
| GH13_8 | GH | 29 | — | — |
| GT5 | GT | 29 | — | — |
| GT35 | GT | 27 | — | — |
| GH13_31 | GH | 18 | — | — |
| GH13_38 | GH | 17 | — | — |
| GH13_20 | GH | 17 | — | — |
| GH15 | GH | 16 | — | — |
| GH13_11 | GH | 13 | — | — |
| S1_2 | S1 | 13 | — | — |
| S1_64 | S1 | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | GH133_SSN.cys · 5.8 MB |
|---|---|
| Newick | gh133_phylogeny.max999.nwk |
| MUSCLE alignment | gh133_phylogeny.aln.faa |
| Target proteins (FASTA) | gh133_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |