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GH13_8 GH GH family — see CAZy reference
208
target proteins
208
CGCs
all
tree leaves
48
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_8_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_8 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_8 | GH | 208 | — | — |
| GT35 | GT | 41 | — | — |
| GT4 | GT | 37 | — | — |
| GT5 | GT | 37 | — | — |
| GH57_3 | GH | 34 | — | — |
| GH13_48 | GH | 30 | — | — |
| GH133 | GH | 29 | — | — |
| GT3 | GT | 27 | — | — |
| GH13_38 | GH | 5 | — | — |
| GH31_1 | GH | 5 | — | — |
| S1_14 | S1 | 4 | — | — |
| GH18 | GH | 4 | — | — |
| GH3 | GH | 3 | — | — |
| S1_27 | S1 | 3 | — | — |
| S1_64 | S1 | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_8_SSN.cys · 1.0 MB |
|---|---|
| Newick | gh13_8_phylogeny.nwk |
| MUSCLE alignment | gh13_8_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_8_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |