↵
GH172 GH GH family — see CAZy reference
632
target proteins
597
CGCs
999 / 632
tree leaves
161
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh172_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH172 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH172 | GH | 632 | — | — |
| GH32 | GH | 32 | — | — |
| S1_14 | S1 | 32 | — | — |
| S1_15 | S1 | 24 | — | — |
| S1_8 | S1 | 23 | — | — |
| GH29 | GH | 21 | — | — |
| PL43 | PL | 20 | — | — |
| S1_17 | S1 | 19 | — | — |
| S1_7 | S1 | 18 | — | — |
| GH116 | GH | 18 | — | — |
| S1_16 | S1 | 16 | — | — |
| GH3 | GH | 13 | — | — |
| GH78 | GH | 13 | — | — |
| GH141 | GH | 11 | — | — |
| S1_4 | S1 | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | GH172_SSN.cys · 3.7 MB |
|---|---|
| Newick | gh172_phylogeny.max999.nwk |
| MUSCLE alignment | gh172_phylogeny.aln.faa |
| Target proteins (FASTA) | gh172_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |