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GH116 GH GH family — see CAZy reference
344
target proteins
337
CGCs
all
tree leaves
120
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh116_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH116 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH116 | GH | 344 | — | — |
| GH94 | GH | 41 | — | — |
| GH1 | GH | 37 | — | — |
| GH172 | GH | 25 | — | — |
| S1_14 | S1 | 20 | — | — |
| GH29 | GH | 14 | — | — |
| S1_16 | S1 | 13 | — | — |
| S1_8 | S1 | 11 | — | — |
| GH97 | GH | 11 | — | — |
| S1_15 | S1 | 10 | — | — |
| GH95 | GH | 9 | — | — |
| S1_7 | S1 | 8 | — | — |
| S1_20 | S1 | 8 | — | — |
| PL43 | PL | 8 | — | — |
| GH9 | GH | 7 | — | — |
Downloads
| Full SSN (Cytoscape) | GH116_SSN.cys · 1.4 MB |
|---|---|
| Newick | gh116_phylogeny.nwk |
| MUSCLE alignment | gh116_phylogeny.aln.faa |
| Target proteins (FASTA) | gh116_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |