↵
PL7 PL PL family — see CAZy reference
325
target proteins
793
CGCs
999 / 325
tree leaves
142
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl7_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL7 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL7_5 | PL | 561 | — | — |
| PL7 | PL | 325 | — | — |
| PL6 | PL | 224 | — | — |
| PL17_2 | PL | 189 | — | — |
| S1_27 | S1 | 110 | — | — |
| PL7_3 | PL | 75 | — | — |
| S1_2 | S1 | 74 | — | — |
| S1_30 | S1 | 66 | — | — |
| PL7_1 | PL | 55 | — | — |
| PL12 | PL | 23 | — | — |
| PL6_3 | PL | 22 | — | — |
| PL6_2 | PL | 14 | — | — |
| S1_4 | S1 | 12 | — | — |
| S1_7 | S1 | 11 | — | — |
| S1_8 | S1 | 10 | — | — |
Downloads
| Full SSN (Cytoscape) | PL7_SSN.cys · 14.0 MB |
|---|---|
| Newick | pl7_phylogeny.max999.nwk |
| MUSCLE alignment | pl7_phylogeny.aln.faa |
| Target proteins (FASTA) | pl7_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |