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PL12 PL PL family — see CAZy reference
556
target proteins
825
CGCs
999 / 556
tree leaves
122
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl12_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL12 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL12 | PL | 556 | — | — |
| GT4 | GT | 338 | — | — |
| PL12_3 | PL | 231 | — | — |
| GT2 | GT | 55 | — | — |
| PL6 | PL | 45 | — | — |
| PL7 | PL | 32 | — | — |
| PL17_2 | PL | 32 | — | — |
| GH88 | GH | 31 | — | — |
| PL12_1 | PL | 23 | — | — |
| PL12_2 | PL | 22 | — | — |
| S1_27 | S1 | 20 | — | — |
| S1_2 | S1 | 16 | — | — |
| GT26 | GT | 15 | — | — |
| S1_11 | S1 | 15 | — | — |
| S1_8 | S1 | 8 | — | — |
Downloads
| Full SSN (Cytoscape) | PL12_SSN.cys · 7.0 MB |
|---|---|
| Newick | pl12_phylogeny.max999.nwk |
| MUSCLE alignment | pl12_phylogeny.aln.faa |
| Target proteins (FASTA) | pl12_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |