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PL12_3 PL PL family — see CAZy reference
231
target proteins
229
CGCs
all
tree leaves
23
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl12_3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL12_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL12_3 | PL | 231 | — | — |
| GT4 | GT | 131 | — | — |
| GT26 | GT | 15 | — | — |
| GT2 | GT | 12 | — | — |
| S1_11 | S1 | 7 | — | — |
| S1_2 | S1 | 7 | — | — |
| PL15 | PL | 3 | — | — |
| GT9 | GT | 2 | — | — |
| GH5_39 | GH | 1 | — | — |
| GT14 | GT | 1 | — | — |
| CE3 | CE | 1 | — | — |
| PL9 | PL | 1 | — | — |
| CBM32 | CBM | 1 | — | — |
| GH8 | GH | 1 | — | — |
| S1_6 | S1 | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL12_3_SSN.cys · 0.6 MB |
|---|---|
| Newick | pl12_3_phylogeny.nwk |
| MUSCLE alignment | pl12_3_phylogeny.aln.faa |
| Target proteins (FASTA) | pl12_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |