↵
GH8 GH GH family — see CAZy reference
644
target proteins
640
CGCs
999 / 644
tree leaves
121
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh8_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH8 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH8 | GH | 644 | — | — |
| GT2 | GT | 424 | — | — |
| CE1 | CE | 70 | — | — |
| GH3 | GH | 46 | — | — |
| GH10 | GH | 36 | — | — |
| GH43_12 | GH | 24 | — | — |
| GH97 | GH | 23 | — | — |
| GH43_29 | GH | 23 | — | — |
| GH43_10 | GH | 17 | — | — |
| GH51_1 | GH | 16 | — | — |
| CE20 | CE | 15 | — | — |
| GH43_1 | GH | 15 | — | — |
| S1_4 | S1 | 14 | — | — |
| GH67 | GH | 14 | — | — |
| GH115 | GH | 13 | — | — |
Downloads
| Full SSN (Cytoscape) | GH8_SSN.cys · 7.3 MB |
|---|---|
| Newick | gh8_phylogeny.max999.nwk |
| MUSCLE alignment | gh8_phylogeny.aln.faa |
| Target proteins (FASTA) | gh8_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |