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GH51_1 GH GH family — see CAZy reference
1,015
target proteins
953
CGCs
999 / 1,015
tree leaves
230
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh51_1_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH51_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH51_1 | GH | 1,015 | — | — |
| GH43_5 | GH | 136 | — | — |
| GH43_4 | GH | 109 | — | — |
| GH43_26 | GH | 98 | — | — |
| GH43_29 | GH | 89 | — | — |
| GH146 | GH | 72 | — | — |
| GH127 | GH | 62 | — | — |
| GH3 | GH | 56 | — | — |
| CE1 | CE | 53 | — | — |
| GH51_2 | GH | 48 | — | — |
| GH10 | GH | 47 | — | — |
| S1_4 | S1 | 45 | — | — |
| GH97 | GH | 37 | — | — |
| GH27 | GH | 32 | — | — |
| GH2_19 | GH | 32 | — | — |
Downloads
| Full SSN (Cytoscape) | GH51_1_SSN.cys · 20.5 MB |
|---|---|
| Newick | gh51_1_phylogeny.max999.nwk |
| MUSCLE alignment | gh51_1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh51_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |