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CE3 CE CE family — see CAZy reference
104
target proteins
103
CGCs
all
tree leaves
68
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE3 | CE | 104 | — | — |
| GT4 | GT | 10 | — | — |
| CE9 | CE | 6 | — | — |
| GH5_8 | GH | 6 | — | — |
| GH62 | GH | 5 | — | — |
| GT2 | GT | 5 | — | — |
| GH31 | GH | 4 | — | — |
| S1_4 | S1 | 3 | — | — |
| GH18 | GH | 3 | — | — |
| S1_7 | S1 | 3 | — | — |
| S1_16 | S1 | 3 | — | — |
| GH176 | GH | 2 | — | — |
| S1_6 | S1 | 2 | — | — |
| CE1 | CE | 2 | — | — |
| GH146 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | CE3_SSN.cys · 0.1 MB |
|---|---|
| Newick | ce3_phylogeny.nwk |
| MUSCLE alignment | ce3_phylogeny.aln.faa |
| Target proteins (FASTA) | ce3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |