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GH176 GH GH family — see CAZy reference
447
target proteins
440
CGCs
999 / 447
tree leaves
79
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh176_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH176 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH176 | GH | 447 | — | — |
| GT4 | GT | 151 | — | — |
| GH63 | GH | 21 | — | — |
| GT2 | GT | 10 | — | — |
| GH65 | GH | 8 | — | — |
| GT81 | GT | 8 | — | — |
| GH130_3 | GH | 8 | — | — |
| GT20 | GT | 6 | — | — |
| GH32 | GH | 6 | — | — |
| GH13_23 | GH | 6 | — | — |
| GH3 | GH | 6 | — | — |
| S1_6 | S1 | 5 | — | — |
| GT87 | GT | 5 | — | — |
| GH15 | GH | 5 | — | — |
| GH13_31 | GH | 4 | — | — |
Downloads
| Full SSN (Cytoscape) | GH176_SSN.cys · 4.4 MB |
|---|---|
| Newick | gh176_phylogeny.max999.nwk |
| MUSCLE alignment | gh176_phylogeny.aln.faa |
| Target proteins (FASTA) | gh176_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |