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GH130_3 GH GH family — see CAZy reference
211
target proteins
211
CGCs
all
tree leaves
67
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh130_3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH130_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH130_3 | GH | 211 | — | — |
| GH92 | GH | 12 | — | — |
| S1_8 | S1 | 9 | — | — |
| GH176 | GH | 8 | — | — |
| S1_15 | S1 | 8 | — | — |
| GH130_6 | GH | 7 | — | — |
| S1_7 | S1 | 7 | — | — |
| S1_17 | S1 | 6 | — | — |
| GT81 | GT | 5 | — | — |
| GT4 | GT | 5 | — | — |
| S1_4 | S1 | 5 | — | — |
| S1_64 | S1 | 5 | — | — |
| S1_25 | S1 | 4 | — | — |
| GH63 | GH | 4 | — | — |
| GT83 | GT | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | GH130_3_SSN.cys · 0.8 MB |
|---|---|
| Newick | gh130_3_phylogeny.nwk |
| MUSCLE alignment | gh130_3_phylogeny.aln.faa |
| Target proteins (FASTA) | gh130_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |