↵
PL12_1 PL PL family — see CAZy reference
23
target proteins
23
CGCs
all
tree leaves
26
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl12_1_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL12_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL12_1 | PL | 23 | — | — |
| GH88 | GH | 17 | — | — |
| PL8_1 | PL | 4 | — | — |
| PL8 | PL | 3 | — | — |
| GH35 | GH | 2 | — | — |
| S1_27 | S1 | 2 | — | — |
| S1_9 | S1 | 2 | — | — |
| S1_15 | S1 | 2 | — | — |
| PL8_3 | PL | 2 | — | — |
| GH2_10 | GH | 2 | — | — |
| PL33_1 | PL | 1 | — | — |
| PL17 | PL | 1 | — | — |
| GH18 | GH | 1 | — | — |
| PL33_2 | PL | 1 | — | — |
| S1_11 | S1 | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL12_1_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl12_1_phylogeny.nwk |
| MUSCLE alignment | pl12_1_phylogeny.aln.faa |
| Target proteins (FASTA) | pl12_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |