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PL8 PL PL family — see CAZy reference
89
target proteins
242
CGCs
all
tree leaves
118
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl8_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL8 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL8_3 | PL | 107 | — | — |
| PL8 | PL | 89 | — | — |
| PL8_2 | PL | 73 | — | — |
| GH88 | GH | 37 | — | — |
| S1_27 | S1 | 34 | — | — |
| GH105 | GH | 32 | — | — |
| GH154 | GH | 29 | — | — |
| S1_15 | S1 | 20 | — | — |
| S1_9 | S1 | 15 | — | — |
| CE9 | CE | 14 | — | — |
| S1_44 | S1 | 14 | — | — |
| S1_7 | S1 | 12 | — | — |
| GH78 | GH | 11 | — | — |
| PL29 | PL | 11 | — | — |
| PL42 | PL | 10 | — | — |
Downloads
| Full SSN (Cytoscape) | PL8_SSN.cys · 0.7 MB |
|---|---|
| Newick | pl8_phylogeny.nwk |
| MUSCLE alignment | pl8_phylogeny.aln.faa |
| Target proteins (FASTA) | pl8_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |