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PL17 PL PL family — see CAZy reference
17
target proteins
666
CGCs
999 / 17
tree leaves
127
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl17_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL17 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL17_2 | PL | 615 | — | — |
| PL6 | PL | 423 | — | — |
| PL7 | PL | 146 | — | — |
| PL7_5 | PL | 138 | — | — |
| S1_27 | S1 | 85 | — | — |
| S1_2 | S1 | 60 | — | — |
| S1_30 | S1 | 40 | — | — |
| PL17_3 | PL | 40 | — | — |
| PL12 | PL | 32 | — | — |
| PL17_1 | PL | 32 | — | — |
| PL38 | PL | 22 | — | — |
| PL34 | PL | 18 | — | — |
| PL17 | PL | 17 | — | — |
| PL17_6 | PL | 16 | — | — |
| PL6_1 | PL | 16 | — | — |
Downloads
| Full SSN (Cytoscape) | PL17_SSN.cys · 25.0 MB |
|---|---|
| Newick | pl17_phylogeny.max999.nwk |
| MUSCLE alignment | pl17_phylogeny.aln.faa |
| Target proteins (FASTA) | pl17_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |