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Home · Families · PL · PL17_1

PL17_1 PL PL family — see CAZy reference

32
target proteins
30
CGCs
all
tree leaves
6
co-occurring families

Overview

ClassPL
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of pl17_1_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.1 MB

Subset of the global SSN restricted to proteins from PL17_1 CGCs.

SSN
.cys
PL17_1_SSN.cys
Full PL17_1 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.1 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

PL17_1 host-group violin

Co-occurring subfamilies first 6 of 6 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
PL17_1PL32——
PL38PL12——
PL7_5PL3——
GH95GH1——
GH1GH1——
PL22PL1——

Downloads

Full SSN (Cytoscape)PL17_1_SSN.cys · 0.1 MB
Newickpl17_1_phylogeny.nwk
MUSCLE alignmentpl17_1_phylogeny.aln.faa
Target proteins (FASTA)pl17_1_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv