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PL22 PL PL family — see CAZy reference
112
target proteins
164
CGCs
all
tree leaves
84
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl22_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL22 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL22 | PL | 112 | — | — |
| PL22_2 | PL | 49 | — | — |
| GH105 | GH | 48 | — | — |
| CE12 | CE | 30 | — | — |
| PL26 | PL | 27 | — | — |
| GH28 | GH | 25 | — | — |
| GH106 | GH | 19 | — | — |
| PL2_2 | PL | 15 | — | — |
| S1_16 | S1 | 11 | — | — |
| GH117 | GH | 11 | — | — |
| CE8 | CE | 10 | — | — |
| GH2_11 | GH | 10 | — | — |
| PL9_1 | PL | 9 | — | — |
| PL9 | PL | 8 | — | — |
| PL11_1 | PL | 7 | — | — |
Downloads
| Full SSN (Cytoscape) | PL22_SSN.cys · 0.4 MB |
|---|---|
| Newick | pl22_phylogeny.nwk |
| MUSCLE alignment | pl22_phylogeny.aln.faa |
| Target proteins (FASTA) | pl22_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |