↵
PL2_2 PL PL family — see CAZy reference
18
target proteins
18
CGCs
all
tree leaves
10
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl2_2_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL2_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL2_2 | PL | 18 | — | — |
| PL22 | PL | 15 | — | — |
| CE8 | CE | 7 | — | — |
| PL9 | PL | 7 | — | — |
| PL9_1 | PL | 5 | — | — |
| PL3_5 | PL | 2 | — | — |
| CBM32 | CBM | 1 | — | — |
| GH13_19 | GH | 1 | — | — |
| GH13_13 | GH | 1 | — | — |
| PL1_6 | PL | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL2_2_SSN.cys · 0.1 MB |
|---|---|
| Newick | pl2_2_phylogeny.nwk |
| MUSCLE alignment | pl2_2_phylogeny.aln.faa |
| Target proteins (FASTA) | pl2_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |