↵
CE8 CE CE family — see CAZy reference
427
target proteins
391
CGCs
999 / 427
tree leaves
128
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce8_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE8 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE8 | CE | 427 | — | — |
| GH28 | GH | 177 | — | — |
| GH105 | GH | 160 | — | — |
| CE12 | CE | 137 | — | — |
| PL1_2 | PL | 121 | — | — |
| GH43_10 | GH | 96 | — | — |
| S1_27 | S1 | 41 | — | — |
| PL1 | PL | 35 | — | — |
| PL1_6 | PL | 28 | — | — |
| PL10_1 | PL | 27 | — | — |
| PL9_1 | PL | 27 | — | — |
| GH3 | GH | 18 | — | — |
| GH78 | GH | 16 | — | — |
| GH4 | GH | 13 | — | — |
| GH95 | GH | 13 | — | — |
Downloads
| Full SSN (Cytoscape) | CE8_SSN.cys · 4.1 MB |
|---|---|
| Newick | ce8_phylogeny.max999.nwk |
| MUSCLE alignment | ce8_phylogeny.aln.faa |
| Target proteins (FASTA) | ce8_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |