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PL1 PL PL family — see CAZy reference
133
target proteins
820
CGCs
999 / 133
tree leaves
215
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl1_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL1_2 | PL | 634 | — | — |
| GT4 | GT | 257 | — | — |
| CE8 | CE | 152 | — | — |
| GH28 | GH | 137 | — | — |
| PL1 | PL | 133 | — | — |
| CE12 | CE | 104 | — | — |
| PL1_5 | PL | 98 | — | — |
| GH105 | GH | 93 | — | — |
| PL1_6 | PL | 83 | — | — |
| GH43_10 | GH | 77 | — | — |
| GH78 | GH | 50 | — | — |
| GH43_9 | GH | 43 | — | — |
| GH95 | GH | 34 | — | — |
| GT2 | GT | 32 | — | — |
| PL10_1 | PL | 32 | — | — |
Downloads
| Full SSN (Cytoscape) | PL1_SSN.cys · 8.6 MB |
|---|---|
| Newick | pl1_phylogeny.max999.nwk |
| MUSCLE alignment | pl1_phylogeny.aln.faa |
| Target proteins (FASTA) | pl1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |