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GH43_9 GH GH family — see CAZy reference
128
target proteins
127
CGCs
all
tree leaves
71
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_9_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43_9 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_9 | GH | 128 | — | — |
| PL1_2 | PL | 43 | — | — |
| CE12 | CE | 16 | — | — |
| GH3 | GH | 16 | — | — |
| GH39 | GH | 11 | — | — |
| PL10_1 | PL | 9 | — | — |
| GH28 | GH | 7 | — | — |
| GH29 | GH | 6 | — | — |
| GH5_4 | GH | 6 | — | — |
| GH35 | GH | 6 | — | — |
| GH31_4 | GH | 6 | — | — |
| PL10_2 | PL | 5 | — | — |
| GH106 | GH | 5 | — | — |
| GH97 | GH | 5 | — | — |
| S1_2 | S1 | 4 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_9_SSN.cys · 0.5 MB |
|---|---|
| Newick | gh43_9_phylogeny.nwk |
| MUSCLE alignment | gh43_9_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_9_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |