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PL10_2 PL PL family — see CAZy reference
24
target proteins
24
CGCs
all
tree leaves
19
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl10_2_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL10_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL10_2 | PL | 24 | — | — |
| GH43_9 | GH | 5 | — | — |
| GH28 | GH | 4 | — | — |
| GH105 | GH | 2 | — | — |
| S1_15 | S1 | 2 | — | — |
| GH175 | GH | 1 | — | — |
| PL1_2 | PL | 1 | — | — |
| CE8 | CE | 1 | — | — |
| GH95 | GH | 1 | — | — |
| GH43_10 | GH | 1 | — | — |
| S1_6 | S1 | 1 | — | — |
| S1_56 | S1 | 1 | — | — |
| GH43_18 | GH | 1 | — | — |
| GH10 | GH | 1 | — | — |
| GH33 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL10_2_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl10_2_phylogeny.nwk |
| MUSCLE alignment | pl10_2_phylogeny.aln.faa |
| Target proteins (FASTA) | pl10_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |