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GH39 GH GH family — see CAZy reference
779
target proteins
732
CGCs
999 / 779
tree leaves
192
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh39_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH39 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH39 | GH | 779 | — | — |
| GT4 | GT | 181 | — | — |
| GH3 | GH | 91 | — | — |
| GT2 | GT | 39 | — | — |
| GH78 | GH | 38 | — | — |
| S1_8 | S1 | 33 | — | — |
| GH106 | GH | 26 | — | — |
| CE20 | CE | 22 | — | — |
| PL43 | PL | 21 | — | — |
| S1_7 | S1 | 20 | — | — |
| GH95 | GH | 20 | — | — |
| GH51_1 | GH | 19 | — | — |
| GH42 | GH | 19 | — | — |
| GH67 | GH | 18 | — | — |
| GH5_4 | GH | 17 | — | — |
Downloads
| Full SSN (Cytoscape) | GH39_SSN.cys · 1.9 MB |
|---|---|
| Newick | gh39_phylogeny.max999.nwk |
| MUSCLE alignment | gh39_phylogeny.aln.faa |
| Target proteins (FASTA) | gh39_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |