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GH16 GH GH family — see CAZy reference
232
target proteins
4,003
CGCs
999 / 232
tree leaves
341
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh16_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH16 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH16_3 | GH | 3,491 | — | — |
| GH3 | GH | 983 | — | — |
| GH17 | GH | 781 | — | — |
| GH149 | GH | 495 | — | — |
| GH30_1 | GH | 488 | — | — |
| CBM102 | CBM | 474 | — | — |
| GT2 | GT | 277 | — | — |
| GH16 | GH | 232 | — | — |
| CBM103 | CBM | 203 | — | — |
| S1_56 | S1 | 163 | — | — |
| GH16_21 | GH | 157 | — | — |
| GH5_46 | GH | 153 | — | — |
| S1_19 | S1 | 153 | — | — |
| GH1 | GH | 137 | — | — |
| S1_7 | S1 | 135 | — | — |
Downloads
| Full SSN (Cytoscape) | GH16_SSN.cys · 163.2 MB |
|---|---|
| Newick | gh16_phylogeny.max999.nwk |
| MUSCLE alignment | gh16_phylogeny.aln.faa |
| Target proteins (FASTA) | gh16_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |