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GH50 GH GH family — see CAZy reference
387
target proteins
341
CGCs
all
tree leaves
134
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh50_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH50 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH50 | GH | 387 | — | — |
| GH117 | GH | 41 | — | — |
| S1_7 | S1 | 34 | — | — |
| S1_24 | S1 | 22 | — | — |
| GH2_1 | GH | 20 | — | — |
| S1_16 | S1 | 20 | — | — |
| GH16_16 | GH | 19 | — | — |
| GH86 | GH | 19 | — | — |
| S1_19 | S1 | 19 | — | — |
| S1_15 | S1 | 16 | — | — |
| GH136 | GH | 14 | — | — |
| GH3 | GH | 14 | — | — |
| S1_14 | S1 | 14 | — | — |
| GH29 | GH | 14 | — | — |
| S1_8 | S1 | 13 | — | — |
Downloads
| Full SSN (Cytoscape) | GH50_SSN.cys · 1.8 MB |
|---|---|
| Newick | gh50_phylogeny.nwk |
| MUSCLE alignment | gh50_phylogeny.aln.faa |
| Target proteins (FASTA) | gh50_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |