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GH16_16 GH GH family — see CAZy reference
104
target proteins
97
CGCs
all
tree leaves
67
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh16_16_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH16_16 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH16_16 | GH | 104 | — | — |
| GH29 | GH | 26 | — | — |
| GH50 | GH | 23 | — | — |
| GH2_1 | GH | 18 | — | — |
| GH86 | GH | 18 | — | — |
| GH117 | GH | 18 | — | — |
| GH16_11 | GH | 14 | — | — |
| S1_19 | S1 | 11 | — | — |
| S1_15 | S1 | 10 | — | — |
| S1_11 | S1 | 9 | — | — |
| S1_27 | S1 | 8 | — | — |
| GH3 | GH | 8 | — | — |
| GH16_15 | GH | 8 | — | — |
| S1_8 | S1 | 8 | — | — |
| GH2_13 | GH | 7 | — | — |
Downloads
| Full SSN (Cytoscape) | GH16_16_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh16_16_phylogeny.nwk |
| MUSCLE alignment | gh16_16_phylogeny.aln.faa |
| Target proteins (FASTA) | gh16_16_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |