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GH89 GH GH family — see CAZy reference
114
target proteins
112
CGCs
all
tree leaves
81
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh89_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH89 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH89 | GH | 114 | — | — |
| GH92 | GH | 35 | — | — |
| GH2_10 | GH | 19 | — | — |
| GH28 | GH | 19 | — | — |
| GH95 | GH | 17 | — | — |
| GH20 | GH | 12 | — | — |
| GH43_34 | GH | 11 | — | — |
| GH29 | GH | 10 | — | — |
| GH115 | GH | 10 | — | — |
| CE9 | CE | 9 | — | — |
| GH3 | GH | 9 | — | — |
| S1_9 | S1 | 7 | — | — |
| S1_20 | S1 | 7 | — | — |
| GH105 | GH | 6 | — | — |
| GH63 | GH | 5 | — | — |
Downloads
| Full SSN (Cytoscape) | GH89_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh89_phylogeny.nwk |
| MUSCLE alignment | gh89_phylogeny.aln.faa |
| Target proteins (FASTA) | gh89_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |