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GH16_13 GH GH family — see CAZy reference
91
target proteins
72
CGCs
all
tree leaves
35
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh16_13_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH16_13 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH16_13 | GH | 91 | — | — |
| S1_7 | S1 | 53 | — | — |
| S1_19 | S1 | 50 | — | — |
| GH127 | GH | 41 | — | — |
| GH167 | GH | 18 | — | — |
| S1_17 | S1 | 8 | — | — |
| GH16_17 | GH | 8 | — | — |
| GH129 | GH | 7 | — | — |
| GH2_10 | GH | 6 | — | — |
| GH2_1 | GH | 5 | — | — |
| S1_27 | S1 | 5 | — | — |
| GH29 | GH | 5 | — | — |
| S1_81 | S1 | 4 | — | — |
| S1_30 | S1 | 3 | — | — |
| S1_6 | S1 | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | GH16_13_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh16_13_phylogeny.nwk |
| MUSCLE alignment | gh16_13_phylogeny.aln.faa |
| Target proteins (FASTA) | gh16_13_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |