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GH130_2 GH GH family — see CAZy reference
259
target proteins
259
CGCs
all
tree leaves
112
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh130_2_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH130_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH92 | GH | 292 | — | — |
| GH130_2 | GH | 259 | — | — |
| CBM9 | CBM | 117 | — | — |
| GH20 | GH | 100 | — | — |
| GH29 | GH | 86 | — | — |
| S1_9 | S1 | 34 | — | — |
| GH2_10 | GH | 31 | — | — |
| S1_11 | S1 | 28 | — | — |
| GH3 | GH | 26 | — | — |
| GH94 | GH | 23 | — | — |
| GH18 | GH | 22 | — | — |
| S1_7 | S1 | 18 | — | — |
| GH130_1 | GH | 16 | — | — |
| GH163 | GH | 16 | — | — |
| GH33 | GH | 14 | — | — |
Downloads
| Full SSN (Cytoscape) | GH130_2_SSN.cys · 4.0 MB |
|---|---|
| Newick | gh130_2_phylogeny.nwk |
| MUSCLE alignment | gh130_2_phylogeny.aln.faa |
| Target proteins (FASTA) | gh130_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |