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GH2_6 GH GH family — see CAZy reference
165
target proteins
164
CGCs
all
tree leaves
119
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_6_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_6 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_6 | GH | 165 | — | — |
| GH53 | GH | 58 | — | — |
| GH29 | GH | 34 | — | — |
| S1_8 | S1 | 33 | — | — |
| GH147 | GH | 28 | — | — |
| S1_15 | S1 | 25 | — | — |
| GH2_1 | GH | 22 | — | — |
| S1_20 | S1 | 21 | — | — |
| GH110 | GH | 18 | — | — |
| GH117 | GH | 14 | — | — |
| S1_16 | S1 | 13 | — | — |
| S1_17 | S1 | 12 | — | — |
| S1_19 | S1 | 12 | — | — |
| GH86 | GH | 11 | — | — |
| S1_11 | S1 | 10 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_6_SSN.cys · 0.7 MB |
|---|---|
| Newick | gh2_6_phylogeny.nwk |
| MUSCLE alignment | gh2_6_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_6_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |