↵
GH12 GH GH family — see CAZy reference
76
target proteins
76
CGCs
all
tree leaves
50
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh12_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH12 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH12 | GH | 76 | — | — |
| GH3 | GH | 29 | — | — |
| GH42 | GH | 26 | — | — |
| S1_6 | S1 | 19 | — | — |
| GH95 | GH | 18 | — | — |
| GH31_3 | GH | 10 | — | — |
| GH74 | GH | 10 | — | — |
| AA10 | AA | 7 | — | — |
| GH31_4 | GH | 6 | — | — |
| GH15 | GH | 5 | — | — |
| GH10 | GH | 4 | — | — |
| GH18 | GH | 3 | — | — |
| CBM2 | CBM | 3 | — | — |
| GH5_2 | GH | 3 | — | — |
| GH43_12 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH12_SSN.cys · 0.2 MB |
|---|---|
| Newick | gh12_phylogeny.nwk |
| MUSCLE alignment | gh12_phylogeny.aln.faa |
| Target proteins (FASTA) | gh12_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |