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CE11 CE CE family — see CAZy reference
8,485
target proteins
8,484
CGCs
999 / 8,485
tree leaves
101
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce11_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE11 CGCs.
SSN
.cys
Open on Zenodo
.cys
Too large for a laptop. This file is hosted on Zenodo; we suggest drilling into a class- or order-level page for a workable session, or downloading and opening on an HPC node.
SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE11 | CE | 8,485 | — | — |
| GT19 | GT | 337 | — | — |
| GT119 | GT | 172 | — | — |
| GT28 | GT | 134 | — | — |
| S1_37 | S1 | 95 | — | — |
| AA4 | AA | 62 | — | — |
| GT121 | GT | 55 | — | — |
| GT4 | GT | 48 | — | — |
| GH20 | GH | 29 | — | — |
| GT2 | GT | 28 | — | — |
| GH23 | GH | 19 | — | — |
| S1_8 | S1 | 12 | — | — |
| S1_27 | S1 | 9 | — | — |
| GT30 | GT | 9 | — | — |
| S1_4 | S1 | 8 | — | — |
Downloads
| Full SSN (Cytoscape, Zenodo) | CE11_SSN.cys · 1.08 GB · hosted externally |
|---|---|
| Newick | ce11_phylogeny.max999.nwk |
| MUSCLE alignment | ce11_phylogeny.aln.faa |
| Target proteins (FASTA) | ce11_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |