↵
CE14 CE CE family — see CAZy reference
2,000
target proteins
2,000
CGCs
999 / 2,000
tree leaves
111
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce14_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE14 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE14 | CE | 2,000 | — | — |
| GT4 | GT | 77 | — | — |
| S1_97 | S1 | 61 | — | — |
| GT2 | GT | 44 | — | — |
| S1_8 | S1 | 27 | — | — |
| S1_9 | S1 | 22 | — | — |
| GH1 | GH | 19 | — | — |
| S1_7 | S1 | 18 | — | — |
| GH18 | GH | 17 | — | — |
| S1_15 | S1 | 17 | — | — |
| GH3 | GH | 16 | — | — |
| S1_37 | S1 | 16 | — | — |
| S1_17 | S1 | 15 | — | — |
| S1_16 | S1 | 12 | — | — |
| CBM47 | CBM | 12 | — | — |
Downloads
| Full SSN (Cytoscape) | CE14_SSN.cys · 35.8 MB |
|---|---|
| Newick | ce14_phylogeny.max999.nwk |
| MUSCLE alignment | ce14_phylogeny.aln.faa |
| Target proteins (FASTA) | ce14_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |