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Home · Families · GH · GH16_9

GH16_9 GH GH family — see CAZy reference

11
target proteins
11
CGCs
all
tree leaves
5
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of gh16_9_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from GH16_9 CGCs.

SSN
.cys
GH16_9_SSN.cys
Full GH16_9 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH16_9 host-group violin

Co-occurring subfamilies first 5 of 5 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
GH16_9GH11——
GH183GH2——
S1_8S11——
GT35GT1——
CE1CE1——

Downloads

Full SSN (Cytoscape)GH16_9_SSN.cys · 0.0 MB
Newickgh16_9_phylogeny.nwk
MUSCLE alignmentgh16_9_phylogeny.aln.faa
Target proteins (FASTA)gh16_9_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv