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Home · Families · S1 · S1_88

S1_88 S1 S1 family — see CAZy reference

2
target proteins
2
CGCs
2
co-occurring families

Overview

ClassS1
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from S1_88 CGCs.

SSN
.cys
S1_88_SSN.cys
Full S1_88 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

S1_88 host-group violin

Co-occurring subfamilies first 2 of 2 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
S1_88S12——
CE9CE2——

Downloads

Full SSN (Cytoscape)S1_88_SSN.cys · 0.0 MB
Target proteins (FASTA)s1_88_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv