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Home · Families · GH · GH130_11

GH130_11 GH GH family — see CAZy reference

47
target proteins
47
CGCs
all
tree leaves
7
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of gh130_11_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.1 MB

Subset of the global SSN restricted to proteins from GH130_11 CGCs.

SSN
.cys
GH130_11_SSN.cys
Full GH130_11 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.1 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH130_11 host-group violin

Co-occurring subfamilies first 7 of 7 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
GH130_11GH47——
PL8_3PL7——
GH13_30GH3——
S1_2S12——
GH43_26GH2——
GH15GH1——
GT4GT1——

Downloads

Full SSN (Cytoscape)GH130_11_SSN.cys · 0.1 MB
Newickgh130_11_phylogeny.nwk
MUSCLE alignmentgh130_11_phylogeny.aln.faa
Target proteins (FASTA)gh130_11_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv