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Home · Families · GH · GH71

GH71 GH GH family — see CAZy reference

16
target proteins
15
CGCs
all
tree leaves
6
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of gh71_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from GH71 CGCs.

SSN
.cys
GH71_SSN.cys
Full GH71 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH71 host-group violin

Co-occurring subfamilies first 6 of 6 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
GH71GH16——
GT4GT5——
CBM96CBM2——
S1_6S11——
GH46GH1——
S1_7S11——

Downloads

Full SSN (Cytoscape)GH71_SSN.cys · 0.0 MB
Newickgh71_phylogeny.nwk
MUSCLE alignmentgh71_phylogeny.aln.faa
Target proteins (FASTA)gh71_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv