↵
Home · Families · PL · PL17_5

PL17_5 PL PL family — see CAZy reference

3
target proteins
3
CGCs
4
co-occurring families

Overview

ClassPL
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from PL17_5 CGCs.

SSN
.cys
PL17_5_SSN.cys
Full PL17_5 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

PL17_5 host-group violin

Co-occurring subfamilies first 4 of 4 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
PL17_5PL3——
CE6CE1——
GH1GH1——
S1_24S11——

Downloads

Full SSN (Cytoscape)PL17_5_SSN.cys · 0.0 MB
Target proteins (FASTA)pl17_5_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv