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Home · Families · S1 · S1_68

S1_68 S1 S1 family — see CAZy reference

6
target proteins
6
CGCs
all
tree leaves
9
co-occurring families

Overview

ClassS1
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of s1_68_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from S1_68 CGCs.

SSN
.cys
S1_68_SSN.cys
Full S1_68 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

S1_68 host-group violin

Co-occurring subfamilies first 9 of 9 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
S1_68S16——
S1_97S14——
GT9GT4——
GT2GT3——
GT66GT2——
GT4GT2——
S1_61S11——
S1_52S11——
S1_59S11——

Downloads

Full SSN (Cytoscape)S1_68_SSN.cys · 0.0 MB
Newicks1_68_phylogeny.nwk
MUSCLE alignments1_68_phylogeny.aln.faa
Target proteins (FASTA)s1_68_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv