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S1_61 S1 S1 family — see CAZy reference
309
target proteins
293
CGCs
all
tree leaves
121
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_61_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_61 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_61 | S1 | 309 | — | — |
| GT4 | GT | 119 | — | — |
| GT2 | GT | 101 | — | — |
| GH3 | GH | 22 | — | — |
| GT9 | GT | 21 | — | — |
| GT66 | GT | 17 | — | — |
| AA3_2 | AA | 12 | — | — |
| GT81 | GT | 11 | — | — |
| GT105 | GT | 11 | — | — |
| GT83 | GT | 10 | — | — |
| S1_14 | S1 | 8 | — | — |
| S1_8 | S1 | 7 | — | — |
| GT119 | GT | 7 | — | — |
| GH94 | GH | 6 | — | — |
| S1_65 | S1 | 6 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_61_SSN.cys · 0.4 MB |
|---|---|
| Newick | s1_61_phylogeny.nwk |
| MUSCLE alignment | s1_61_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_61_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |