↵
CE21 CE CE family — see CAZy reference
37
target proteins
35
CGCs
all
tree leaves
9
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce21_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE21 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE21 | CE | 37 | — | — |
| GT4 | GT | 12 | — | — |
| GH166 | GH | 5 | — | — |
| GH191 | GH | 4 | — | — |
| GT2 | GT | 2 | — | — |
| GT51 | GT | 1 | — | — |
| S1_7 | S1 | 1 | — | — |
| S1_37 | S1 | 1 | — | — |
| GH51_1 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | CE21_SSN.cys · 0.0 MB |
|---|---|
| Newick | ce21_phylogeny.nwk |
| MUSCLE alignment | ce21_phylogeny.aln.faa |
| Target proteins (FASTA) | ce21_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |