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Home · Families · GH · GH193

GH193 GH GH family — see CAZy reference

8
target proteins
6
CGCs
all
tree leaves
7
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of gh193_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from GH193 CGCs.

SSN
.cys
GH193_SSN.cys
Full GH193 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH193 host-group violin

Co-occurring subfamilies first 7 of 7 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
GH193GH8——
GH3GH4——
GH94GH4——
S1_11S12——
S1_19S11——
GH194GH1——
PL15_1PL1——

Downloads

Full SSN (Cytoscape)GH193_SSN.cys · 0.0 MB
Newickgh193_phylogeny.nwk
MUSCLE alignmentgh193_phylogeny.aln.faa
Target proteins (FASTA)gh193_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv