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GH194 GH GH family — see CAZy reference
18
target proteins
18
CGCs
all
tree leaves
21
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh194_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH194 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH194 | GH | 18 | — | — |
| GH3 | GH | 6 | — | — |
| GH94 | GH | 6 | — | — |
| GH144 | GH | 6 | — | — |
| GH35 | GH | 5 | — | — |
| CBM102 | CBM | 4 | — | — |
| GH1 | GH | 3 | — | — |
| S1_11 | S1 | 2 | — | — |
| PL1_2 | PL | 2 | — | — |
| GH129 | GH | 1 | — | — |
| GH179 | GH | 1 | — | — |
| CBM32 | CBM | 1 | — | — |
| S1_19 | S1 | 1 | — | — |
| GH193 | GH | 1 | — | — |
| PL15_1 | PL | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH194_SSN.cys · 0.0 MB |
|---|---|
| Newick | gh194_phylogeny.nwk |
| MUSCLE alignment | gh194_phylogeny.aln.faa |
| Target proteins (FASTA) | gh194_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |