↵
PL41 PL PL family — see CAZy reference
16
target proteins
16
CGCs
all
tree leaves
10
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl41_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL41 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL41 | PL | 16 | — | — |
| PL17_6 | PL | 9 | — | — |
| PL34 | PL | 9 | — | — |
| PL7_3 | PL | 5 | — | — |
| CE7 | CE | 4 | — | — |
| PL8 | PL | 4 | — | — |
| GT2 | GT | 2 | — | — |
| PL6_2 | PL | 2 | — | — |
| GH10 | GH | 1 | — | — |
| GT26 | GT | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL41_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl41_phylogeny.nwk |
| MUSCLE alignment | pl41_phylogeny.aln.faa |
| Target proteins (FASTA) | pl41_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |