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CE7 CE CE family — see CAZy reference
472
target proteins
466
CGCs
999 / 472
tree leaves
172
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce7_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE7 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE7 | CE | 472 | — | — |
| GH3 | GH | 36 | — | — |
| GH10 | GH | 26 | — | — |
| GH33 | GH | 17 | — | — |
| S1_15 | S1 | 16 | — | — |
| GH92 | GH | 16 | — | — |
| S1_7 | S1 | 16 | — | — |
| GH67 | GH | 14 | — | — |
| GH39 | GH | 14 | — | — |
| GH28 | GH | 13 | — | — |
| CE20 | CE | 13 | — | — |
| S1_17 | S1 | 13 | — | — |
| GT2 | GT | 11 | — | — |
| GH42 | GH | 10 | — | — |
| GH1 | GH | 10 | — | — |
Downloads
| Full SSN (Cytoscape) | CE7_SSN.cys · 1.6 MB |
|---|---|
| Newick | ce7_phylogeny.max999.nwk |
| MUSCLE alignment | ce7_phylogeny.aln.faa |
| Target proteins (FASTA) | ce7_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |