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Home · Families · GH · GH190

GH190 GH GH family — see CAZy reference

28
target proteins
27
CGCs
all
tree leaves
5
co-occurring families

Overview

ClassGH
Annotation sourcedbCAN consensus (HMM + DIAMOND, "recommended-result" column)
SSN sourceSubset of global_ssn.sqlite (DIAMOND e ≤ 1e-30)
Tree inputMUSCLE-super5 alignment of gh190_proteins.faa
Tree methodFastTreeMP −lg −nosupport

Phylogeny interactive · search MAG / protein

Sequence Similarity Network Cytoscape-openable session · 0.0 MB

Subset of the global SSN restricted to proteins from GH190 CGCs.

SSN
.cys
GH190_SSN.cys
Full GH190 SSN at e ≤ 1e-30. Node attributes: Leiden community, enzyme category, top annotation, global x/y. Edge attributes: bitscore, e-value.
Cytoscape session bundle · 0.0 MB
Download
To open in Cytoscape Desktop (free): File → Open and pick the .cys.

SCoNe co-occurrence community-level

Taxonomy sunburst GTDB drilldown

Host distribution CGCs per genome by group

GH190 host-group violin

Co-occurring subfamilies first 5 of 5 · .tsv

SubfamilyClassCGCs# genes# SSN clusters
GH190GH28——
CE4CE2——
GH1GH1——
GH39GH1——
GH18GH1——

Downloads

Full SSN (Cytoscape)GH190_SSN.cys · 0.0 MB
Newickgh190_phylogeny.nwk
MUSCLE alignmentgh190_phylogeny.aln.faa
Target proteins (FASTA)gh190_proteins.faa
All proteins in associated CGCssequences.faa
CGC listcgcs.txt
Co-occurring familiesranked_families.tsv