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GH5_17 GH GH family — see CAZy reference
2
target proteins
2
CGCs
9
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH5_17 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH9 | GH | 8 | — | — |
| CBM3 | CBM | 2 | — | — |
| GH48 | GH | 2 | — | — |
| GH5_17 | GH | 2 | — | — |
| GH5_1 | GH | 2 | — | — |
| GH8 | GH | 1 | — | — |
| GH5_7 | GH | 1 | — | — |
| GH44 | GH | 1 | — | — |
| GH74 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH5_17_SSN.cys · 0.0 MB |
|---|---|
| Target proteins (FASTA) | gh5_17_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |